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Comment: Comment: VEP filtering query
3 months ago by prasundutta87 ▴ 660
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1
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521
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Comment: Comment: VEP filtering query
3 months ago by prasundutta87 ▴ 660
2
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4
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520
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VEP filtering query
ensembl-vep
3 months ago by prasundutta87 ▴ 660
0
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1
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1.7k
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Comment: Comment: Which minimap2 parameters to set while performing mapping to avoid such mismatch
7 months ago by prasundutta87 ▴ 660
1
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0
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1.2k
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Comment: Comment: Coverage histogram query
7 months ago by prasundutta87 ▴ 660
0
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1
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1.2k
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Comment: Comment: Coverage histogram query
8 months ago by prasundutta87 ▴ 660
0
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1
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1.2k
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Comment: Comment: Coverage histogram query
8 months ago by prasundutta87 ▴ 660
0
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0
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1.2k
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Comment: Comment: Coverage histogram query
8 months ago by prasundutta87 ▴ 660
0
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1
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1.2k
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Comment: Comment: Coverage histogram query
8 months ago by prasundutta87 ▴ 660
1
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10
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1.2k
views
Coverage histogram query
Alignment
7 months ago by prasundutta87 ▴ 660
0
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1
reply
647
views
Comment: Comment: I need help with a methyl array data analysis
10 months ago by prasundutta87 ▴ 660
0
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0
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591
views
Comment: Comment: best practice to choose AF threshold based on population number
13 months ago by prasundutta87 ▴ 660
0
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2
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591
views
best practice to choose AF threshold based on population number
VCF AF allele-frequency
13 months ago by prasundutta87 ▴ 660
0
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0
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825
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Comment: Comment: Very high coverage Nanopore alignment Hg38
13 months ago by prasundutta87 ▴ 660
0
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0
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941
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Comment: Comment: VCF file filter for breakpoints
13 months ago by prasundutta87 ▴ 660
1
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1
reply
941
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Comment: Comment: VCF file filter for breakpoints
13 months ago by prasundutta87 ▴ 660
0
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0
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955
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Comment: Comment: Sample Level Filtering During GATK Germline Short Variant Discovery
13 months ago by prasundutta87 ▴ 660
0
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0
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319
views
snpeff annotation query
snpeff structural-variation VCF
updated 13 months ago by 43k • written 13 months ago by ▴ 660
0
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0
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846
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Comment: Comment: alternate allele frequency and minor allele frequency
17 months ago by prasundutta87 ▴ 660
0
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2
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846
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alternate allele frequency and minor allele frequency
rare common SNV SV VCF
17 months ago by prasundutta87 ▴ 660
0
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0
replies
888
views
Answer: Answer: How to parse the output file of snpEFF
19 months ago by prasundutta87 ▴ 660
2
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0
replies
11k
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Comment: Comment: Correct way to calculate VAF (Variant allele fraction) from a VCF file
20 months ago by prasundutta87 ▴ 660
1
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2
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11k
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Comment: Comment: Correct way to calculate VAF (Variant allele fraction) from a VCF file
20 months ago by prasundutta87 ▴ 660
4
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11
replies
11k
views
Correct way to calculate VAF (Variant allele fraction) from a VCF file
VCF snp
20 months ago by prasundutta87 ▴ 660
0
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0
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294
views
Tool for mode of inheritance based filtering for structural variants
StructuralVariants genotypes SNVs trio modeOfInheritance
2.0 years ago by prasundutta87 ▴ 660
0
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1
reply
1.0k
views
Comment: Comment: How to run fastqc for 500 raw sequence reads (100 single end and 400 paired end
2.1 years ago by prasundutta87 ▴ 660
0
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0
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4.4k
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Comment: Comment: RNA Seq data network analysis
2.2 years ago by prasundutta87 ▴ 660
2
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2
replies
2.8k
views
EPIC methylation manifest GRch38 query
methylation coordinates EPIC bedgraph CpG
updated 2.2 years ago by ▴ 10 • written 3.8 years ago by ▴ 660
0
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0
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416
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query on filtering/dropping samples based on total reads (yield)
paired-end fastq Illumina
2.4 years ago by prasundutta87 ▴ 660
0
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0
replies
1.4k
views
Comment: Comment: EPIC array data - How to find the total number of genes in the array?
2.4 years ago by prasundutta87 ▴ 660
0
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1
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1.4k
views
Answer: Answer: EPIC array data - How to find the total number of genes in the array?
2.4 years ago by prasundutta87 ▴ 660
0
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0
replies
1.9k
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Comment: Comment: Variant annotation using VEP
2.5 years ago by prasundutta87 ▴ 660
0
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1
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1.9k
views
Comment: Comment: Variant annotation using VEP
2.5 years ago by prasundutta87 ▴ 660
0
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1
reply
1.9k
views
Comment: Comment: Variant annotation using VEP
2.5 years ago by prasundutta87 ▴ 660
0
votes
1
reply
1.9k
views
Comment: Comment: Variant annotation using VEP
2.5 years ago by prasundutta87 ▴ 660
0
votes
1
reply
1.9k
views
Answer: Answer: Variant annotation using VEP
2.5 years ago by prasundutta87 ▴ 660
0
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0
replies
568
views
Answer: Answer: calculation of gene coverage
2.5 years ago by prasundutta87 ▴ 660
0
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1
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582
views
Structural variation nomenclature ambiguity
Structural_Variation
updated 2.6 years ago by ▴ 520 • written 2.6 years ago by ▴ 660
0
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0
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1.1k
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Comment: Comment: Annotate Structural variants with population specific allele frequency values
2.6 years ago by prasundutta87 ▴ 660
0
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2
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1.1k
views
Annotate Structural variants with population specific allele frequency values
allele Structural_variation VEP frequency VCF
2.6 years ago by prasundutta87 ▴ 660
1
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1
reply
2.1k
views
Answer: Answer: Extract CDS from maker gff
2.8 years ago by prasundutta87 ▴ 660
0
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0
replies
1.4k
views
Comment: Comment: VEP chromosome name query
2.8 years ago by prasundutta87 ▴ 660
3
votes
6
replies
1.4k
views
VEP chromosome name query
ensembl VCF annotation VEP
2.8 years ago by prasundutta87 ▴ 660
0
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0
replies
1.4k
views
Comment: Comment: VEP chromosome name query
2.8 years ago by prasundutta87 ▴ 660
0
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1
reply
1.4k
views
Comment: Comment: VEP chromosome name query
2.8 years ago by prasundutta87 ▴ 660
1
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0
replies
628
views
Comment: Comment: How to calculate the *necessary* sequencing depth for a SNP
2.9 years ago by prasundutta87 ▴ 660
0
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0
replies
513
views
About Structural variation genotypes
variants Structural-variants variant-calling genotypes
updated 6 months ago by 43k • written 2.9 years ago by ▴ 660
0
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1
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1.7k
views
Comment: Comment: Core Dumped - STAR mapping
2.9 years ago by prasundutta87 ▴ 660
1
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1
reply
1.4k
views
Comment: Comment: Masking sites in a vcf file
2.9 years ago by prasundutta87 ▴ 660
0
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1
reply
1.7k
views
Comment: Comment: Core Dumped - STAR mapping
2.9 years ago by prasundutta87 ▴ 660
260 results • Page 1 of 6
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