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815
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Answer: A: Microarray data from different sets but same platform
3.1 years ago by Ar ★ 1.1k
0
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0
replies
687
views
Bowtie2 Alignment Summary vs Samtools
alignment bowtie2 samtools
3.1 years ago by Ar ★ 1.1k
0
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0
replies
1.7k
views
Comment: C: Extract the overlapping paired-end reads
3.3 years ago by Ar ★ 1.1k
0
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1
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1.7k
views
Comment: C: Extract the overlapping paired-end reads
3.3 years ago by Ar ★ 1.1k
3
votes
6
replies
1.7k
views
Extract the overlapping paired-end reads
samtools paired-end reads
3.3 years ago by Ar ★ 1.1k
0
votes
1
reply
1.1k
views
Demultiplexing inDrop dataset
RNA-Seq single-cell in-Drop dataset
updated 4.3 years ago by • 0 • written 4.4 years ago by ★ 1.1k
1
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1
reply
3.8k
views
Comment: C: Questions related to ChromHMM+using MACS2 peak calling output bed file as input
4.9 years ago by Ar ★ 1.1k
1
vote
0
replies
3.3k
views
Answer: A: WGCNA cannot be done to compare two conditions?
4.9 years ago by Ar ★ 1.1k
4
votes
1
reply
3.8k
views
Answer: A: Questions related to ChromHMM+using MACS2 peak calling output bed file as input
4.9 years ago by Ar ★ 1.1k
0
votes
1
reply
1.6k
views
Public RNA-Seq and Microarray samples from same tissue
Microarray RNA-Seq Batch-Effect
updated 8 days ago by 43k • written 7.9 years ago by ★ 1.1k
1
vote
0
replies
2.1k
views
Tool: DASC -- detecting hidden batch effects in gene expression datasets (Array/RNA-Seq/scRNA-Seq)
RNA-Seq scRNA-Seq R Batch-Effect
updated 6 days ago by 43k • written 6.9 years ago by ★ 1.1k
45
votes
8
replies
13k
views
Difference between the Fasta files from UCSC and Gencode/Ensembl
genome-build RNA-Seq ChIP-Seq
updated 7.3 years ago by ▴ 600 • written 7.7 years ago by ★ 1.1k
0
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0
replies
4.8k
views
Comment: C: ComBat (SVA) Application - Two Technical Effects
7.6 years ago by Ar ★ 1.1k
0
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1
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4.8k
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Comment: C: ComBat (SVA) Application - Two Technical Effects
7.6 years ago by Ar ★ 1.1k
2
votes
1
reply
11k
views
DESeq2 design and interaction terms
RNA-Seq DESeq2 R
7.6 years ago by Ar ★ 1.1k
5
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3
replies
12k
views
Answer: A: PCA tpm fpkm
7.6 years ago by Ar ★ 1.1k
1
vote
0
replies
13k
views
Comment: C: Difference between the Fasta files from UCSC and Gencode/Ensembl
7.7 years ago by Ar ★ 1.1k
0
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0
replies
13k
views
Comment: C: Difference between the Fasta files from UCSC and Gencode/Ensembl
7.7 years ago by Ar ★ 1.1k
0
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0
replies
58k
views
Comment: C: Recommended cutoff for FDR - 0.05 or 0.1
7.7 years ago by Ar ★ 1.1k
0
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2
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58k
views
Comment: C: Recommended cutoff for FDR - 0.05 or 0.1
7.7 years ago by Ar ★ 1.1k
2
votes
1
reply
58k
views
Comment: C: Recommended cutoff for FDR - 0.05 or 0.1
7.7 years ago by Ar ★ 1.1k
7
votes
0
replies
58k
views
Answer: A: Recommended cutoff for FDR - 0.05 or 0.1
7.7 years ago by Ar ★ 1.1k
0
votes
0
replies
2.5k
views
Answer: A: chip-seq (histone modifications) and rna-seq data for benchmarking
7.7 years ago by Ar ★ 1.1k
1
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1
reply
3.8k
views
Comment: C: List of genes expressed in Brain and different tissues
7.7 years ago by Ar ★ 1.1k
0
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0
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3.8k
views
Comment: C: List of genes expressed in Brain and different tissues
7.7 years ago by Ar ★ 1.1k
4
votes
6
replies
3.8k
views
List of genes expressed in Brain and different tissues
RNA-Seq genes brain
updated 7.7 years ago by 47k • written 7.7 years ago by ★ 1.1k
0
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0
replies
2.4k
views
Comment: C: Does differential binding analysis across different ChIP-Seq samples makes sense
7.7 years ago by Ar ★ 1.1k
2
votes
3
replies
2.4k
views
Does differential binding analysis across different ChIP-Seq samples makes sense ?
ChIP-Seq
updated 7.7 years ago by 104k • written 7.7 years ago by ★ 1.1k
0
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0
replies
2.9k
views
Job: Postdoc Position in Cancer Epigenomics, MD Anderson Cancer Center - Houston, USA
ChIP-Seq RNA-Seq R
updated 12 months ago by 43k • written 7.8 years ago by ★ 1.1k
0
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0
replies
1.7k
views
Comment: C: ENCODE 2016: Research Applications and Users Meeting
7.8 years ago by Ar ★ 1.1k
1
vote
2
replies
3.5k
views
Answer: A: The number of cluster in Kmean clustering
7.9 years ago by Ar ★ 1.1k
0
votes
1
reply
4.3k
views
Comment: C: what is the meaning of covariates in ComBat
7.9 years ago by Ar ★ 1.1k
0
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0
replies
28k
views
Comment: C: removing batch effects using ComBat and SVA
7.9 years ago by Ar ★ 1.1k
0
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1
reply
28k
views
Comment: C: removing batch effects using ComBat and SVA
7.9 years ago by Ar ★ 1.1k
0
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0
replies
2.8k
views
Comment: C: Transcription factor binding site prediction program/algorithm
7.9 years ago by Ar ★ 1.1k
2
votes
1
reply
2.8k
views
Answer: A: Transcription factor binding site prediction program/algorithm
7.9 years ago by Ar ★ 1.1k
2
votes
1
reply
28k
views
Comment: C: removing batch effects using ComBat and SVA
7.9 years ago by Ar ★ 1.1k
0
votes
0
replies
4.2k
views
Comment: C: reading CELfiles for Human Exon 1.0 ST Array [CDF: HuEx-1_0-st-v2,coreR3,A200711
7.9 years ago by Ar ★ 1.1k
0
votes
1
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4.2k
views
Comment: C: reading CELfiles for Human Exon 1.0 ST Array [CDF: HuEx-1_0-st-v2,coreR3,A200711
7.9 years ago by Ar ★ 1.1k
1
vote
1
reply
5.4k
views
Comment: C: What is the correct way of using GTEx, CCLE and HPA data?
7.9 years ago by Ar ★ 1.1k
0
votes
1
reply
5.7k
views
Comment: C: Length of transcripts of mm9
7.9 years ago by Ar ★ 1.1k
1
vote
1
reply
5.4k
views
Comment: C: What is the correct way of using GTEx, CCLE and HPA data?
7.9 years ago by Ar ★ 1.1k
0
votes
1
reply
5.7k
views
Answer: A: Length of transcripts of mm9
7.9 years ago by Ar ★ 1.1k
0
votes
1
reply
4.2k
views
Comment: C: reading CELfiles for Human Exon 1.0 ST Array [CDF: HuEx-1_0-st-v2,coreR3,A200711
7.9 years ago by Ar ★ 1.1k
0
votes
1
reply
28k
views
Comment: C: removing batch effects using ComBat and SVA
7.9 years ago by Ar ★ 1.1k
9
votes
1
reply
28k
views
Answer: A: removing batch effects using ComBat and SVA
7.9 years ago by Ar ★ 1.1k
0
votes
1
reply
2.1k
views
Answer: A: Identify genes near occurrences of a TF binding sequence
7.9 years ago by Ar ★ 1.1k
0
votes
1
reply
2.1k
views
Answer: A: Identify genes near occurrences of a TF binding sequence
7.9 years ago by Ar ★ 1.1k
0
votes
0
replies
3.5k
views
Answer: A: compare gene count profiles between samples
7.9 years ago by Ar ★ 1.1k
0
votes
0
replies
3.3k
views
Comment: C: Error in R Script
7.9 years ago by Ar ★ 1.1k
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