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Recent Replies
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> What specifications and operating system would be ideal for my case?
For choice of OS: Linux to access the large pool of open source sof…
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Ok. First update your phenotypes because in the 6th column all the values are -9 meaning missing, and then run `--assoc`. You can do the fo…
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You'll probably get away with using one of the other analysis pipelines, like Alevin-fry with much less than 128GB of RAM. Workstations can…
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> (which is weird, if it's in proper pair, read and its mate should be both mapped)
So that was my thought as well, I think the code you l…
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At the same time? You need a server, not a PC. Google around (and search the site as well with keyword "conf…
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9: read must be paired AND mate must be unmapped
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the data is binary and associated with a disease but we're studying only the cases and there are other phenotypes of severity
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could you share an example command of using STARSolo for the alignment? Did you use the json file directly? Or do you have to re-format the…
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Please answer my above question. What type of data is it, binary (cases and controls) or quantitative? You need to update Phenotype info in…
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This is how my .fam file looks like ![enter image description here][1]
[1]: /media/images/caccd97c-3606-48d2-aa32-423a9882
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What type of phenotype is in your data? It looks like it does not have affection status (default values for affection status will be: 1 = u…
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Agree. This is also a great solution that flips the problem on its head, as it were, Dominick. I dont want to be preachy, but this is why i…
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> linked to a list of grants
Using [**EntrezDirect**][1] this may be much simpler if you have the grant number available. I tested this w…
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Hi Dominick,
One thing I am not sure of is, how is it that you got the other PMID in the first place?
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